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README.md

SAMCOV (SAM/BAM Coverage)

This tool aggregates the coverage of multiple BAM/SAM file.

Installation with PIP

Using pip, installation is simple.

  1. Go to the package page.

  2. Follow the instructions there.

Usage

  1. After installing, run samcov -h to see information about the arguments.

  2. Run samcov alignment.bam --csv output.csv where replacing alignment.bam with your alignment file (SAM and BAM are supported). Replace output.csv with the path to the CSV for the output information.